ACT

:: Analysis of Common Targets for circular RNAs ::

The Laboratory of
X-omics

ACT takes the sequence and processes as circular configuration. Common target genes, defined as coregulated genes by circRNA-associated miRNAs, will be exported and ranked by the targeting frequency (time). ACT currently supports the miRNAs and targets of miRNAs from Homo sapiens.
Input sequence here: >Example_Seq_HIPK3_2_2 GTATGGCCTCACAAGTCTTGGTCTACCCACCATATGTTTATCAAACTCAG TCAAGTGCCTTTTGTAGTGTGAAGAAACTCAAAGTAGAGCCAAGCAGTTG TGTATTCCAGGAAAGAAACTATCCACGGACCTATGTGAATGGTAGAAACT TTGGAAATTCTCATCCTCCCACTAAGGGTAGTGCTTTTCAGACAAAGATA CCATTTAATAGACCTCGAGGACACAACTTTTCATTGCAGACAAGTGCTGT TGTTTTGAAAAACACTGCAGGTGCTACAAAGGTCATAGCAGCTCAGGCAC AGCAAGCTCACGTGCAGGCACCTCAGATTGGGGCGTGGCGAAACAGATTG CATTTCCTAGAAGGCCCCCAGCGATGTGGATTGAAGCGCAAGAGTGAGGA GTTGGATAATCATAGCAGCGCAATGCAGATTGTCGATGAATTGTCCATAC TTCCTGCAATGTTGCAAACCAACATGGGAAATCCAGTGACAGTTGTGACA GCTACCACAGGATCAAAACAGAATTGTACCACTGGAGAAGGTGACTATCA GTTAGTACAGCATGAAGTCTTATGCTCCATGAAAAATACTTACGAAGTCC TTGATTTTCTTGGTCGAGGCACGTTTGGCCAGGTAGTTAAATGCTGGAAA AGAGGGACAAATGAAATTGTAGCAATCAAAATTTTGAAGAATCATCCTTC TTATGCCCGTCAAGGTCAAATAGAAGTGAGCATATTAGCAAGGCTCAGTA CTGAAAATGCTGATGAATATAACTTTGTACGAGCTTATGAATGCTTTCAG CACCGTAACCATACTTGTTTAGTCTTTGAGATGCTGGAACAAAACTTGTA TGACTTTCTGAAACAAAATAAATTTAGTCCCCTGCCACTAAAAGTGATTC GGCCCATTCTTCAACAAGTGGCCACTGCACTGAAAAAATTGAAAAGTCTT GGTTTAATTCATGCTGATCTCAAGCCAGAGAATATTATGTTGGTGGATCC TGTTCGGCAGCCTTACAGGGTTAAAGTAATAGACTTTGGGTCGGCCAGTC ATGTATCAAAGACTGTTTGTTCAACATATCTACAATCTCGGTACTACAG or Upload FASTA file: Note: total input length is limited to 10,000 nt. E-mail (optional) We’ll send the result link and respond to issues.
See example of output (circHIPK3) HERE.
Citation: Lin YC, Lee YC, Chang KL, Hsiao KY. (2019) Analysis of common targets for circular RNAs. BMC Bioinformatics 20, 372.

2018 Laboratory of X-omics

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