ACT

:: Analysis of Common Targets for circular RNAs ::

The Laboratory of
X-omics

ACT files Back to home
user_sequence.txt	The original inputted sequence.
user_sequence_backspliceJCT.txt	The sequence of backsplice junction generated from the first and last 30 nucleotides of inputted sequences.
user_miranda_output.txt user_miranda_output_bJCT.txt	Raw results from miRanda.
user_pmiranda.txt	from original seq	Parsed miRanda results in table form.
user_pmiranda_bJCT_raw.txt	from backsplice junction
user_pmiranda_bJCT.txt	non-redudant results
user_ACT_table.txt	Complete output of ACT (Columns separated by ‘tab’): Each row represents a circular RNA. There are 4 columns. Column 1: sequence ID. Column 2: List of gene symbols of circRNA targets, ranked by targeting time and separated by semicolon “;”. Column 3: List of common targeting time of circRNA targets, ranked by targeting time and separated by semicolon “;”. These numbers are paired with the gene symbols listed in the column 2. Column 4: List of miRNAs with binding sites found in the given circRNA sequence.
user_ACT_report.txt	Summary of ACT for each circRNA, shown as a block. Column description: circRNA: names of inputted sequence length (nt): length of the inputted sequence #miRNAs: number of unique miRNAs #miRNA-binding sites: number of miRNA binding sites found on the circRNA miR-sites/100nt: number of miRNA binding sites found on the circRNA per 100 nt #targets: total number of target genes Common Targets (targeting #): gene symbol (number of targeting time) List of Common Targets [Gene Symbol Only]: gene symbols of target genes
user_ACT_list.gmt	Top 100 candidate genes exported as gmt format.
user_ACT.log	Log file for monitoring the progress of analysis.
[ACT]: ACT is done.
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2018 Laboratory of X-omics

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